J3_2UUC_016

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

2UUC|1|A|U|1212, 2UUC|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2UUC_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2494

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

2UUC|1|A|C|990
2UUC|1|A|U|991
2UUC|1|A|U|992
2UUC|1|A|G|993
2UUC|1|A|A|994
2UUC|1|A|C|995
2UUC|1|A|A|996
2UUC|1|A|U|997
*
2UUC|1|A|A|1044
2UUC|1|A|C|1045
2UUC|1|A|A|1046
2UUC|1|A|G|1047
*
2UUC|1|A|C|1210
2UUC|1|A|U|1211
2UUC|1|A|U|1212
2UUC|1|A|A|1213
2UUC|1|A|C|1214
2UUC|1|A|G|1215

Current chains

Chain A

16S RRNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14