J3_2UXB_001
3D structure
- PDB id
- 2UXB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 2UXB|1|A|U|871, 2UXB|1|A|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2UXB_001 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0724
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
2UXB|1|A|C|826
2UXB|1|A|U|827
2UXB|1|A|A|828
2UXB|1|A|G|829
*
2UXB|1|A|C|857
2UXB|1|A|G|858
2UXB|1|A|A|859
2UXB|1|A|A|860
2UXB|1|A|G|861
*
2UXB|1|A|C|868
2UXB|1|A|G|869
2UXB|1|A|U|870
2UXB|1|A|U|871
2UXB|1|A|A|872
2UXB|1|A|A|873
2UXB|1|A|G|874
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain B
- RIBOSOMAL PROTEIN S2
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain H
- RIBOSOMAL PROTEIN S8
Coloring options: