3D structure

PDB id
2UXB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
2UXB|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_2UXB_012 not in the Motif Atlas
Homologous match to J3_4LFB_012
Geometric discrepancy: 0.0833
The information below is about J3_4LFB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

2UXB|1|A|U|672
2UXB|1|A|G|673
*
2UXB|1|A|C|717
2UXB|1|A|G|718
2UXB|1|A|C|719
2UXB|1|A|C|720
2UXB|1|A|G|721
2UXB|1|A|A|722
2UXB|1|A|U|723
2UXB|1|A|G|724
2UXB|1|A|G|725
*
2UXB|1|A|C|732
2UXB|1|A|A|733
2UXB|1|A|G|734

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain F
RIBOSOMAL PROTEIN S6
Chain G
RIBOSOMAL PROTEIN S7
Chain K
RIBOSOMAL PROTEIN S11
Chain O
RIBOSOMAL PROTEIN S15
Chain R
RIBOSOMAL PROTEIN S18

Coloring options:


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