J3_2UXD_005

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

2UXD|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2UXD_005 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1986

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

2UXD|1|A|C|990
2UXD|1|A|U|991
2UXD|1|A|U|992
2UXD|1|A|G|993
2UXD|1|A|A|994
2UXD|1|A|C|995
2UXD|1|A|A|996
2UXD|1|A|U|997
*
2UXD|1|A|A|1044
2UXD|1|A|C|1045
2UXD|1|A|A|1046
2UXD|1|A|G|1047
*
2UXD|1|A|C|1210
2UXD|1|A|U|1211
2UXD|1|A|U|1212
2UXD|1|A|A|1213
2UXD|1|A|C|1214
2UXD|1|A|G|1215

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN S14