J3_2VQF_005
3D structure
- PDB id
- 2VQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 2VQF|1|A|U|1212
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2VQF_005 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.1641
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
2VQF|1|A|C|990
2VQF|1|A|U|991
2VQF|1|A|U|992
2VQF|1|A|G|993
2VQF|1|A|A|994
2VQF|1|A|C|995
2VQF|1|A|A|996
2VQF|1|A|U|997
*
2VQF|1|A|A|1044
2VQF|1|A|C|1045
2VQF|1|A|A|1046
2VQF|1|A|G|1047
*
2VQF|1|A|C|1210
2VQF|1|A|U|1211
2VQF|1|A|U|1212
2VQF|1|A|A|1213
2VQF|1|A|C|1214
2VQF|1|A|G|1215
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain N
- 30S RIBOSOMAL PROTEIN S14 TYPE Z
Coloring options: