J3_2ZJP_005

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

2ZJP|1|X|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJP_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1086

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

2ZJP|1|X|C|1319
2ZJP|1|X|A|1320
2ZJP|1|X|A|1321
2ZJP|1|X|G|1322
*
2ZJP|1|X|C|1621
2ZJP|1|X|G|1622
2ZJP|1|X|C|1623
2ZJP|1|X|A|1624
2ZJP|1|X|A|1625
2ZJP|1|X|A|1626
2ZJP|1|X|C|1627
*
2ZJP|1|X|G|1636
2ZJP|1|X|U|1637
2ZJP|1|X|G|1638

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34