J3_2ZJP_009

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

2ZJP|1|X|A|2497, 2ZJP|1|X|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJP_009 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1129

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

2ZJP|1|X|C|2496
2ZJP|1|X|A|2497
2ZJP|1|X|U|2498
2ZJP|1|X|C|2499
*
2ZJP|1|X|G|2524
2ZJP|1|X|U|2525
2ZJP|1|X|U|2526
*
2ZJP|1|X|A|2540
2ZJP|1|X|U|2541
2ZJP|1|X|U|2542
2ZJP|1|X|A|2543
2ZJP|1|X|A|2544
2ZJP|1|X|A|2545
2ZJP|1|X|G|2546

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L13

Chain H

50S RIBOSOMAL PROTEIN L14