J3_2ZJP_019

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

2ZJP|1|X|C|1358, 2ZJP|1|X|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJP_019 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1023

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

2ZJP|1|X|U|1357
2ZJP|1|X|C|1358
2ZJP|1|X|G|1359
2ZJP|1|X|G|1360
2ZJP|1|X|G|1361
2ZJP|1|X|A|1362
2ZJP|1|X|C|1363
*
2ZJP|1|X|G|1394
2ZJP|1|X|A|1395
2ZJP|1|X|C|1396
2ZJP|1|X|A|1397
2ZJP|1|X|G|1398
*
2ZJP|1|X|C|1415
2ZJP|1|X|A|1416

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L23