J3_2ZJP_020

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJP_020 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.1457

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

2ZJP|1|X|U|2074
2ZJP|1|X|U|2075
2ZJP|1|X|G|2076
*
2ZJP|1|X|C|2179
2ZJP|1|X|U|2180
2ZJP|1|X|A|2181
2ZJP|1|X|A|2182
2ZJP|1|X|C|2183
*
2ZJP|1|X|G|2202
2ZJP|1|X|G|2203
2ZJP|1|X|A|2204
2ZJP|1|X|C|2205
2ZJP|1|X|C|2206
2ZJP|1|X|G|2207

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2

Chain U

50S RIBOSOMAL PROTEIN L28