J3_2ZJR_005

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

2ZJR|1|X|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJR_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1072

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

2ZJR|1|X|C|1319
2ZJR|1|X|A|1320
2ZJR|1|X|A|1321
2ZJR|1|X|G|1322
*
2ZJR|1|X|C|1621
2ZJR|1|X|G|1622
2ZJR|1|X|C|1623
2ZJR|1|X|A|1624
2ZJR|1|X|A|1625
2ZJR|1|X|A|1626
2ZJR|1|X|C|1627
*
2ZJR|1|X|G|1636
2ZJR|1|X|U|1637
2ZJR|1|X|G|1638

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34