J3_2ZJR_007

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJR_007 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.1493

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

2ZJR|1|X|U|2074
2ZJR|1|X|U|2075
2ZJR|1|X|G|2076
*
2ZJR|1|X|C|2179
2ZJR|1|X|U|2180
2ZJR|1|X|A|2181
2ZJR|1|X|A|2182
2ZJR|1|X|C|2183
*
2ZJR|1|X|G|2202
2ZJR|1|X|G|2203
2ZJR|1|X|A|2204
2ZJR|1|X|C|2205
2ZJR|1|X|C|2206
2ZJR|1|X|G|2207

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28