J3_2ZJR_009
3D structure
- PDB id
- 2ZJR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.91 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 2ZJR|1|X|A|2497, 2ZJR|1|X|U|2498
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2ZJR_009 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.0859
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
2ZJR|1|X|C|2496
2ZJR|1|X|A|2497
2ZJR|1|X|U|2498
2ZJR|1|X|C|2499
*
2ZJR|1|X|G|2524
2ZJR|1|X|U|2525
2ZJR|1|X|U|2526
*
2ZJR|1|X|A|2540
2ZJR|1|X|U|2541
2ZJR|1|X|U|2542
2ZJR|1|X|A|2543
2ZJR|1|X|A|2544
2ZJR|1|X|A|2545
2ZJR|1|X|G|2546
Current chains
- Chain X
- ribosomal 23S RNA
Nearby chains
- Chain G
- 50S ribosomal protein L13
- Chain H
- 50S ribosomal protein L14
Coloring options: