J3_2ZM6_016

3D structure

PDB id

2ZM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

2ZM6|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZM6_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1476

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

2ZM6|1|A|C|990
2ZM6|1|A|U|991
2ZM6|1|A|U|992
2ZM6|1|A|G|993
2ZM6|1|A|A|994
2ZM6|1|A|C|995
2ZM6|1|A|A|996
2ZM6|1|A|U|997
*
2ZM6|1|A|A|1044
2ZM6|1|A|C|1045
2ZM6|1|A|A|1046
2ZM6|1|A|G|1047
*
2ZM6|1|A|C|1210
2ZM6|1|A|U|1211
2ZM6|1|A|U|1212
2ZM6|1|A|A|1213
2ZM6|1|A|C|1214
2ZM6|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z