J3_300D_001

3D structure

PDB id

300D (explore in PDB, NAKB, or RNA 3D Hub)

Description

CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKED

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUGAUGAG*CGAAAC*GUCA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_300D_001 not in the Motif Atlas

Geometric match to J3_359D_001

Geometric discrepancy: 0.1144

The information below is about J3_359D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_45099.1

Basepair signature

cWW-cWW-F-F-F-cWW-F-cSW-F-tSH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

300D|1|A|U|21
300D|1|A|C|30
300D|1|A|U|40
300D|1|A|G|50
300D|1|A|A|60
300D|1|A|U|70
300D|1|A|G|80
300D|1|A|A|90
300D|1|A|G|101
*
300D|1|B|C|111
300D|1|B|G|120
300D|1|B|A|130
300D|1|B|A|140
300D|1|B|A|151
300D|1|B|C|152
*
300D|1|B|G|162
300D|1|B|U|161
300D|1|B|C|170
300D|1|B|A|11

Current chains

Chain A

RNA HAMMERHEAD RIBOZYME

Chain B

RNA HAMMERHEAD RIBOZYME

Nearby chains