J3_3BBX_010

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

3BBX|1|B|U|2833, 3BBX|1|B|A|2835, 3BBX|1|B|U|2884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3BBX_010 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.2383

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

3BBX|1|B|G|2812
3BBX|1|B|A|2813
3BBX|1|B|A|2814
3BBX|1|B|C|2815
*
3BBX|1|B|G|2831
3BBX|1|B|U|2832
3BBX|1|B|U|2833
3BBX|1|B|G|2834
3BBX|1|B|A|2835
3BBX|1|B|U|2836
*
3BBX|1|B|A|2882
3BBX|1|B|A|2883
3BBX|1|B|U|2884
3BBX|1|B|G|2885
3BBX|1|B|A|2886
3BBX|1|B|A|2887
3BBX|1|B|C|2888

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17