3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GC*GCGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3BBX_011 not in the Motif Atlas
Geometric match to J3_8VTW_036
Geometric discrepancy: 0.0884
The information below is about J3_8VTW_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_69021.1
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
7

Unit IDs

3BBX|1|B|G|30
3BBX|1|B|C|31
*
3BBX|1|B|G|474
3BBX|1|B|C|475
3BBX|1|B|G|476
3BBX|1|B|A|477
3BBX|1|B|A|478
3BBX|1|B|A|479
3BBX|1|B|A|480
3BBX|1|B|G|481
*
3BBX|1|B|C|509
3BBX|1|B|C|510

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain Q
50S ribosomal protein L20
Chain U
50S ribosomal protein L24

Coloring options:


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