J3_3BBX_011

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3BBX_011 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0884

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

3BBX|1|B|G|30
3BBX|1|B|C|31
*
3BBX|1|B|G|474
3BBX|1|B|C|475
3BBX|1|B|G|476
3BBX|1|B|A|477
3BBX|1|B|A|478
3BBX|1|B|A|479
3BBX|1|B|A|480
3BBX|1|B|G|481
*
3BBX|1|B|C|509
3BBX|1|B|C|510

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24