3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
3BBX|1|B|U|34, 3BBX|1|B|U|448, 3BBX|1|B|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3BBX_015 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0717
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

3BBX|1|B|C|32
3BBX|1|B|C|33
3BBX|1|B|U|34
3BBX|1|B|G|35
*
3BBX|1|B|C|445
3BBX|1|B|G|446
3BBX|1|B|A|447
3BBX|1|B|U|448
3BBX|1|B|A|449
3BBX|1|B|G|450
3BBX|1|B|U|451
3BBX|1|B|G|452
3BBX|1|B|A|453
3BBX|1|B|A|454
3BBX|1|B|C|455
3BBX|1|B|C|456
3BBX|1|B|A|457
3BBX|1|B|G|458
3BBX|1|B|U|459
3BBX|1|B|A|460
3BBX|1|B|C|461
*
3BBX|1|B|G|468
3BBX|1|B|G|469
3BBX|1|B|A|470
3BBX|1|B|A|471
3BBX|1|B|A|472
3BBX|1|B|G|473

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain E
50S ribosomal protein L4
Chain Q
50S ribosomal protein L20
Chain T
50S ribosomal protein L23

Coloring options:


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