J3_3BBX_015

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

3BBX|1|B|U|34, 3BBX|1|B|U|448, 3BBX|1|B|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3BBX_015 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0717

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

3BBX|1|B|C|32
3BBX|1|B|C|33
3BBX|1|B|U|34
3BBX|1|B|G|35
*
3BBX|1|B|C|445
3BBX|1|B|G|446
3BBX|1|B|A|447
3BBX|1|B|U|448
3BBX|1|B|A|449
3BBX|1|B|G|450
3BBX|1|B|U|451
3BBX|1|B|G|452
3BBX|1|B|A|453
3BBX|1|B|A|454
3BBX|1|B|C|455
3BBX|1|B|C|456
3BBX|1|B|A|457
3BBX|1|B|G|458
3BBX|1|B|U|459
3BBX|1|B|A|460
3BBX|1|B|C|461
*
3BBX|1|B|G|468
3BBX|1|B|G|469
3BBX|1|B|A|470
3BBX|1|B|A|471
3BBX|1|B|A|472
3BBX|1|B|G|473

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain T

50S ribosomal protein L23