J3_3CC2_001

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAAAC*GUGUCAG*CAG

Length

15 nucleotides

Bulged bases

3CC2|1|0|A|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CC2_001 not in the Motif Atlas

Homologous match to J3_4V9F_001

Geometric discrepancy: 0.0264

The information below is about J3_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_06335.1

Basepair signature

cWW-F-F-tSH-cSS-tWH-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

3CC2|1|0|C|240
3CC2|1|0|A|241
3CC2|1|0|A|242
3CC2|1|0|A|243
3CC2|1|0|C|244
*
3CC2|1|0|G|267
3CC2|1|0|U|268
3CC2|1|0|G|269
3CC2|1|0|U|270
3CC2|1|0|C|271
3CC2|1|0|A|272
3CC2|1|0|G|273
*
3CC2|1|0|C|377
3CC2|1|0|A|378
3CC2|1|0|G|379

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e