J3_3CC2_017

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUCG*CGAUAGUGAACAAGUAG*CGAACG

Length

27 nucleotides

Bulged bases

3CC2|1|0|C|31, 3CC2|1|0|U|454, 3CC2|1|0|A|462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CC2_017 not in the Motif Atlas

Homologous match to J3_4V9F_013

Geometric discrepancy: 0.0274

The information below is about J3_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

3CC2|1|0|C|29
3CC2|1|0|U|30
3CC2|1|0|C|31
3CC2|1|0|G|32
*
3CC2|1|0|C|451
3CC2|1|0|G|452
3CC2|1|0|A|453
3CC2|1|0|U|454
3CC2|1|0|A|455
3CC2|1|0|G|456
3CC2|1|0|U|457
3CC2|1|0|G|458
3CC2|1|0|A|459
3CC2|1|0|A|460
3CC2|1|0|C|461
3CC2|1|0|A|462
3CC2|1|0|A|463
3CC2|1|0|G|464
3CC2|1|0|U|465
3CC2|1|0|A|466
3CC2|1|0|G|467
*
3CC2|1|0|C|474
3CC2|1|0|G|475
3CC2|1|0|A|476
3CC2|1|0|A|477
3CC2|1|0|C|478
3CC2|1|0|G|479

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P