J3_3CCJ_009

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

3CCJ|1|0|A|2553, 3CCJ|1|0|U|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CCJ_009 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0529

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3CCJ|1|0|C|2552
3CCJ|1|0|A|2553
3CCJ|1|0|U|2554
3CCJ|1|0|C|2555
*
3CCJ|1|0|G|2580
3CCJ|1|0|U|2581
3CCJ|1|0|G|2582
3CCJ|1|0|A|2583
*
3CCJ|1|0|U|2595
3CCJ|1|0|A|2596
3CCJ|1|0|U|2597
3CCJ|1|0|U|2598
3CCJ|1|0|A|2599
3CCJ|1|0|A|2600
3CCJ|1|0|A|2601
3CCJ|1|0|G|2602

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P

Chain K

50S ribosomal protein L14P