J3_3CCM_001

3D structure

PDB id

3CCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2611U

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAAAC*GUGUCAG*CAG

Length

15 nucleotides

Bulged bases

3CCM|1|0|A|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CCM_001 not in the Motif Atlas

Homologous match to J3_4V9F_001

Geometric discrepancy: 0.0538

The information below is about J3_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_06335.1

Basepair signature

cWW-F-F-tSH-cSS-tWH-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

3CCM|1|0|C|240
3CCM|1|0|A|241
3CCM|1|0|A|242
3CCM|1|0|A|243
3CCM|1|0|C|244
*
3CCM|1|0|G|267
3CCM|1|0|U|268
3CCM|1|0|G|269
3CCM|1|0|U|270
3CCM|1|0|C|271
3CCM|1|0|A|272
3CCM|1|0|G|273
*
3CCM|1|0|C|377
3CCM|1|0|A|378
3CCM|1|0|G|379

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e