3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUCG*CGAUAGUGAACAAGUAG*CGAACG
Length
27 nucleotides
Bulged bases
3CCQ|1|0|C|31, 3CCQ|1|0|U|454, 3CCQ|1|0|A|462
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3CCQ_017 not in the Motif Atlas
Homologous match to J3_4V9F_013
Geometric discrepancy: 0.0301
The information below is about J3_4V9F_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

3CCQ|1|0|C|29
3CCQ|1|0|U|30
3CCQ|1|0|C|31
3CCQ|1|0|G|32
*
3CCQ|1|0|C|451
3CCQ|1|0|G|452
3CCQ|1|0|A|453
3CCQ|1|0|U|454
3CCQ|1|0|A|455
3CCQ|1|0|G|456
3CCQ|1|0|U|457
3CCQ|1|0|G|458
3CCQ|1|0|A|459
3CCQ|1|0|A|460
3CCQ|1|0|C|461
3CCQ|1|0|A|462
3CCQ|1|0|A|463
3CCQ|1|0|G|464
3CCQ|1|0|U|465
3CCQ|1|0|A|466
3CCQ|1|0|G|467
*
3CCQ|1|0|C|474
3CCQ|1|0|G|475
3CCQ|1|0|A|476
3CCQ|1|0|A|477
3CCQ|1|0|C|478
3CCQ|1|0|G|479

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain 1
50S ribosomal protein L37e
Chain 2
50S ribosomal protein L39e
Chain C
50S ribosomal protein L4P
Chain T
50S ribosomal protein L24P

Coloring options:


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