J3_3CCR_019

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCC*GUCUAGCGAACC*GAUGAC

Length

21 nucleotides

Bulged bases

3CCR|1|0|A|2425, 3CCR|1|0|A|2463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CCR_019 not in the Motif Atlas

Homologous match to J3_4V9F_018

Geometric discrepancy: 0.1157

The information below is about J3_4V9F_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44792.1

Basepair signature

cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

3CCR|1|0|G|2316
3CCR|1|0|C|2317
3CCR|1|0|C|2318
*
3CCR|1|0|G|2421
3CCR|1|0|U|2422
3CCR|1|0|C|2423
3CCR|1|0|U|2424
3CCR|1|0|A|2425
3CCR|1|0|G|2426
3CCR|1|0|C|2427
3CCR|1|0|G|2428
3CCR|1|0|A|2429
3CCR|1|0|A|2430
3CCR|1|0|C|2431
3CCR|1|0|C|2432
*
3CCR|1|0|G|2459
3CCR|1|0|A|2460
3CCR|1|0|U|2461
3CCR|1|0|G|2462
3CCR|1|0|A|2463
3CCR|1|0|C|2464

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain L

50S ribosomal protein L15P

Chain Q

50S ribosomal protein L21e