J3_3CD6_009
3D structure
- PDB id
- 3CD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CAUC*GUGA*UAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 3CD6|1|0|A|2553, 3CD6|1|0|U|2554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3CD6_009 not in the Motif Atlas
- Homologous match to J3_4V9F_009
- Geometric discrepancy: 0.0356
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68010.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
3CD6|1|0|C|2552
3CD6|1|0|A|2553
3CD6|1|0|U|2554
3CD6|1|0|C|2555
*
3CD6|1|0|G|2580
3CD6|1|0|U|2581
3CD6|1|0|G|2582
3CD6|1|0|A|2583
*
3CD6|1|0|U|2595
3CD6|1|0|A|2596
3CD6|1|0|U|2597
3CD6|1|0|U|2598
3CD6|1|0|A|2599
3CD6|1|0|A|2600
3CD6|1|0|A|2601
3CD6|1|0|G|2602
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain J
- 50S ribosomal protein L13P
- Chain K
- 50S ribosomal protein L14P
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