J3_3CF5_003

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGA*UUCAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CF5_003 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.2468

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

3CF5|1|X|G|1066
3CF5|1|X|G|1067
3CF5|1|X|A|1068
*
3CF5|1|X|U|1092
3CF5|1|X|U|1093
3CF5|1|X|C|1094
3CF5|1|X|A|1095
3CF5|1|X|A|1096
3CF5|1|X|A|1097
3CF5|1|X|G|1098
*
3CF5|1|X|C|1113
3CF5|1|X|A|1114
3CF5|1|X|C|1115

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain F

50S RIBOSOMAL PROTEIN L11