J3_3CF5_005

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

3CF5|1|X|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CF5_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.091

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

3CF5|1|X|C|1319
3CF5|1|X|A|1320
3CF5|1|X|A|1321
3CF5|1|X|G|1322
*
3CF5|1|X|C|1621
3CF5|1|X|G|1622
3CF5|1|X|C|1623
3CF5|1|X|A|1624
3CF5|1|X|A|1625
3CF5|1|X|A|1626
3CF5|1|X|C|1627
*
3CF5|1|X|G|1636
3CF5|1|X|U|1637
3CF5|1|X|G|1638

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34