J3_3CF5_007

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CF5_007 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.1569

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3CF5|1|X|U|2074
3CF5|1|X|U|2075
3CF5|1|X|G|2076
*
3CF5|1|X|C|2179
3CF5|1|X|U|2180
3CF5|1|X|A|2181
3CF5|1|X|A|2182
3CF5|1|X|C|2183
*
3CF5|1|X|G|2202
3CF5|1|X|G|2203
3CF5|1|X|A|2204
3CF5|1|X|C|2205
3CF5|1|X|C|2206
3CF5|1|X|G|2207

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2

Chain U

50S RIBOSOMAL PROTEIN L28