J3_3CF5_009

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

3CF5|1|X|A|2497, 3CF5|1|X|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CF5_009 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.0838

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

3CF5|1|X|C|2496
3CF5|1|X|A|2497
3CF5|1|X|U|2498
3CF5|1|X|C|2499
*
3CF5|1|X|G|2524
3CF5|1|X|U|2525
3CF5|1|X|U|2526
*
3CF5|1|X|A|2540
3CF5|1|X|U|2541
3CF5|1|X|U|2542
3CF5|1|X|A|2543
3CF5|1|X|A|2544
3CF5|1|X|A|2545
3CF5|1|X|G|2546

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L13

Chain H

50S RIBOSOMAL PROTEIN L14