J3_3CF5_011
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCCAUAG*CGC*GUCAG
- Length
- 15 nucleotides
- Bulged bases
- 3CF5|1|Z|C|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3CF5_011 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.1215
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3CF5|1|Z|C|12
3CF5|1|Z|C|13
3CF5|1|Z|C|14
3CF5|1|Z|A|15
3CF5|1|Z|U|16
3CF5|1|Z|A|17
3CF5|1|Z|G|18
*
3CF5|1|Z|C|70
3CF5|1|Z|G|71
3CF5|1|Z|C|72
*
3CF5|1|Z|G|109
3CF5|1|Z|U|110
3CF5|1|Z|C|111
3CF5|1|Z|A|112
3CF5|1|Z|G|113
Current chains
- Chain Z
- RRNA-5S RIBOSOMAL RNA
Nearby chains
- Chain L
- 50S RIBOSOMAL PROTEIN L18
- Chain S
- 50S RIBOSOMAL PROTEIN L25
- Chain T
- 50S RIBOSOMAL PROTEIN L27
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: