J3_3CF5_018

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

3CF5|1|X|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CF5_018 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.11

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

3CF5|1|X|U|1357
3CF5|1|X|C|1358
3CF5|1|X|G|1359
3CF5|1|X|G|1360
3CF5|1|X|G|1361
3CF5|1|X|A|1362
3CF5|1|X|C|1363
*
3CF5|1|X|G|1394
3CF5|1|X|A|1395
3CF5|1|X|C|1396
3CF5|1|X|A|1397
3CF5|1|X|G|1398
*
3CF5|1|X|C|1415
3CF5|1|X|A|1416

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L23