J3_3CMA_009

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

3CMA|1|0|A|2553, 3CMA|1|0|U|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CMA_009 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0344

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3CMA|1|0|C|2552
3CMA|1|0|A|2553
3CMA|1|0|U|2554
3CMA|1|0|C|2555
*
3CMA|1|0|G|2580
3CMA|1|0|U|2581
3CMA|1|0|G|2582
3CMA|1|0|A|2583
*
3CMA|1|0|U|2595
3CMA|1|0|A|2596
3CMA|1|0|U|2597
3CMA|1|0|U|2598
3CMA|1|0|A|2599
3CMA|1|0|A|2600
3CMA|1|0|A|2601
3CMA|1|0|G|2602

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P

Chain K

50S ribosomal protein L14P