J3_3CME_001

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAAAC*GUGUCAG*CAG

Length

15 nucleotides

Bulged bases

3CME|1|0|A|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CME_001 not in the Motif Atlas

Homologous match to J3_4V9F_001

Geometric discrepancy: 0.0673

The information below is about J3_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_96248.1

Basepair signature

cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

3CME|1|0|C|240
3CME|1|0|A|241
3CME|1|0|A|242
3CME|1|0|A|243
3CME|1|0|C|244
*
3CME|1|0|G|267
3CME|1|0|U|268
3CME|1|0|G|269
3CME|1|0|U|270
3CME|1|0|C|271
3CME|1|0|A|272
3CME|1|0|G|273
*
3CME|1|0|C|377
3CME|1|0|A|378
3CME|1|0|G|379

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e