J3_3CME_009

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

3CME|1|0|A|2553, 3CME|1|0|U|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CME_009 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0429

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3CME|1|0|C|2552
3CME|1|0|A|2553
3CME|1|0|U|2554
3CME|1|0|C|2555
*
3CME|1|0|G|2580
3CME|1|0|U|2581
3CME|1|0|G|2582
3CME|1|0|A|2583
*
3CME|1|0|U|2595
3CME|1|0|A|2596
3CME|1|0|U|2597
3CME|1|0|U|2598
3CME|1|0|A|2599
3CME|1|0|A|2600
3CME|1|0|A|2601
3CME|1|0|G|2602

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P

Chain K

50S ribosomal protein L14P