J3_3CXC_019

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCC*GUCUAGCGAACC*GAUGAC

Length

21 nucleotides

Bulged bases

3CXC|1|0|A|2425, 3CXC|1|0|A|2463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CXC_019 not in the Motif Atlas

Homologous match to J3_4V9F_018

Geometric discrepancy: 0.0622

The information below is about J3_4V9F_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44792.1

Basepair signature

cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

3CXC|1|0|G|2316
3CXC|1|0|C|2317
3CXC|1|0|C|2318
*
3CXC|1|0|G|2421
3CXC|1|0|U|2422
3CXC|1|0|C|2423
3CXC|1|0|U|2424
3CXC|1|0|A|2425
3CXC|1|0|G|2426
3CXC|1|0|C|2427
3CXC|1|0|G|2428
3CXC|1|0|A|2429
3CXC|1|0|A|2430
3CXC|1|0|C|2431
3CXC|1|0|C|2432
*
3CXC|1|0|G|2459
3CXC|1|0|A|2460
3CXC|1|0|U|2461
3CXC|1|0|G|2462
3CXC|1|0|A|2463
3CXC|1|0|C|2464

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain K

RIBOSOMAL PROTEIN L15

Chain P

RIBOSOMAL PROTEIN L21E