J3_3G4S_005

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

3G4S|1|0|G|1683, 3G4S|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3G4S_005 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.0803

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

3G4S|1|0|U|1412
3G4S|1|0|A|1413
3G4S|1|0|A|1414
3G4S|1|0|G|1415
*
3G4S|1|0|C|1680
3G4S|1|0|G|1681
3G4S|1|0|A|1682
3G4S|1|0|G|1683
3G4S|1|0|A|1684
3G4S|1|0|A|1685
3G4S|1|0|C|1686
*
3G4S|1|0|G|1695
3G4S|1|0|U|1696
3G4S|1|0|G|1697

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e

Chain P

50S ribosomal protein L19e