J3_3I55_001

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CAAAC*GUGUCAG*CAG

Length

15 nucleotides

Bulged bases

3I55|1|0|A|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3I55_001 not in the Motif Atlas

Homologous match to J3_4V9F_001

Geometric discrepancy: 0.0541

The information below is about J3_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_96248.1

Basepair signature

cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

3I55|1|0|C|240
3I55|1|0|A|241
3I55|1|0|A|242
3I55|1|0|A|243
3I55|1|0|C|244
*
3I55|1|0|G|267
3I55|1|0|U|268
3I55|1|0|G|269
3I55|1|0|U|270
3I55|1|0|C|271
3I55|1|0|A|272
3I55|1|0|G|273
*
3I55|1|0|C|377
3I55|1|0|A|378
3I55|1|0|G|379

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e