J3_3IWN_002

3D structure

PDB id

3IWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of a bacterial c-di-GMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCACAGGG*CAAAG*UUACC

Length

18 nucleotides

Bulged bases

3IWN|1|B|C|105, 3IWN|1|B|C|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3IWN_002 not in the Motif Atlas

Homologous match to J3_3IWN_003

Geometric discrepancy: 0.3514

The information below is about J3_3IWN_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_96372.2

Basepair signature

cWW-cHS-F-cWS-cWW-F-tHW-cWW-F-cWW-F

Number of instances in this motif group

3

Unit IDs

3IWN|1|B|G|104
3IWN|1|B|C|105
3IWN|1|B|A|106
3IWN|1|B|C|107
3IWN|1|B|A|108
3IWN|1|B|G|109
3IWN|1|B|G|110
3IWN|1|B|G|111
*
3IWN|1|B|C|136
3IWN|1|B|A|137
3IWN|1|B|A|138
3IWN|1|B|A|139
3IWN|1|B|G|140
*
3IWN|1|B|U|184
3IWN|1|B|U|185
3IWN|1|B|A|186
3IWN|1|B|C|187
3IWN|1|B|C|188

Current chains

Chain B

C-di-GMP riboswitch

Nearby chains