J3_3J0D_001

3D structure

PDB id

3J0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

11.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J0D_001 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.172

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

3J0D|1|A|G|1055
3J0D|1|A|G|1056
3J0D|1|A|A|1057
*
3J0D|1|A|U|1081
3J0D|1|A|U|1082
3J0D|1|A|U|1083
3J0D|1|A|A|1084
3J0D|1|A|A|1085
3J0D|1|A|A|1086
3J0D|1|A|G|1087
*
3J0D|1|A|C|1102
3J0D|1|A|A|1103
3J0D|1|A|C|1104

Current chains

Chain A

ribosomal 23S RNA

Nearby chains

Chain G

50S ribosomal protein L11