J3_3J28_021

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

3J28|1|N|A|975, 3J28|1|N|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J28_021 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.3934

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3J28|1|N|U|955
3J28|1|N|U|956
3J28|1|N|U|957
3J28|1|N|A|958
3J28|1|N|A|959
3J28|1|N|U|960
3J28|1|N|U|961
3J28|1|N|C|962
*
3J28|1|N|G|973
3J28|1|N|A|974
3J28|1|N|A|975
3J28|1|N|G|976
3J28|1|N|A|977
3J28|1|N|A|978
3J28|1|N|C|979
3J28|1|N|C|980
3J28|1|N|U|981
3J28|1|N|U|982
3J28|1|N|A|983
3J28|1|N|C|984
*
3J28|1|N|G|1221
3J28|1|N|G|1222
3J28|1|N|C|1223
3J28|1|N|U|1224
3J28|1|N|A|1225

Current chains

Chain N

16S rRNA

Nearby chains