J3_3J2B_020

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

3J2B|1|N|A|975, 3J2B|1|N|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J2B_020 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.3952

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3J2B|1|N|U|955
3J2B|1|N|U|956
3J2B|1|N|U|957
3J2B|1|N|A|958
3J2B|1|N|A|959
3J2B|1|N|U|960
3J2B|1|N|U|961
3J2B|1|N|C|962
*
3J2B|1|N|G|973
3J2B|1|N|A|974
3J2B|1|N|A|975
3J2B|1|N|G|976
3J2B|1|N|A|977
3J2B|1|N|A|978
3J2B|1|N|C|979
3J2B|1|N|C|980
3J2B|1|N|U|981
3J2B|1|N|U|982
3J2B|1|N|A|983
3J2B|1|N|C|984
*
3J2B|1|N|G|1221
3J2B|1|N|G|1222
3J2B|1|N|C|1223
3J2B|1|N|U|1224
3J2B|1|N|A|1225

Current chains

Chain N

16S rRNA

Nearby chains