J3_3J2C_002

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GUUUAAUUC*GAAGAACCUUACC*GGGCUAC

Length

29 nucleotides

Bulged bases

3J2C|1|M|A|975, 3J2C|1|M|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J2C_002 not in the Motif Atlas

Homologous match to J3_6CZR_020

Geometric discrepancy: 0.3734

The information below is about J3_6CZR_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86907.1

Basepair signature

cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

3J2C|1|M|G|954
3J2C|1|M|U|955
3J2C|1|M|U|956
3J2C|1|M|U|957
3J2C|1|M|A|958
3J2C|1|M|A|959
3J2C|1|M|U|960
3J2C|1|M|U|961
3J2C|1|M|C|962
*
3J2C|1|M|G|973
3J2C|1|M|A|974
3J2C|1|M|A|975
3J2C|1|M|G|976
3J2C|1|M|A|977
3J2C|1|M|A|978
3J2C|1|M|C|979
3J2C|1|M|C|980
3J2C|1|M|U|981
3J2C|1|M|U|982
3J2C|1|M|A|983
3J2C|1|M|C|984
3J2C|1|M|C|985
*
3J2C|1|M|G|1220
3J2C|1|M|G|1221
3J2C|1|M|G|1222
3J2C|1|M|C|1223
3J2C|1|M|U|1224
3J2C|1|M|A|1225
3J2C|1|M|C|1226

Current chains

Chain M

16S rRNA head domain

Nearby chains