J3_3J2D_003

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J2D_003 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.2159

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

3J2D|1|N|C|936
3J2D|1|N|A|937
3J2D|1|N|A|938
3J2D|1|N|G|939
*
3J2D|1|N|C|1344
3J2D|1|N|U|1345
3J2D|1|N|A|1346
3J2D|1|N|G|1347
3J2D|1|N|U|1348
3J2D|1|N|A|1349
3J2D|1|N|A|1350
*
3J2D|1|N|U|1372
3J2D|1|N|G|1373
3J2D|1|N|A|1374
3J2D|1|N|A|1375
3J2D|1|N|U|1376
3J2D|1|N|A|1377
3J2D|1|N|C|1378
3J2D|1|N|G|1379

Current chains

Chain N

16S rRNA

Nearby chains