J3_3J5L_003
3D structure
- PDB id
- 3J5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli 50S subunit with ErmBL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GGA*UUUAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J5L_003 not in the Motif Atlas
- Homologous match to J3_6PRV_001
- Geometric discrepancy: 0.2277
- The information below is about J3_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37832.1
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
3J5L|1|A|G|1055
3J5L|1|A|G|1056
3J5L|1|A|A|1057
*
3J5L|1|A|U|1081
3J5L|1|A|U|1082
3J5L|1|A|U|1083
3J5L|1|A|A|1084
3J5L|1|A|A|1085
3J5L|1|A|A|1086
3J5L|1|A|G|1087
*
3J5L|1|A|C|1102
3J5L|1|A|A|1103
3J5L|1|A|C|1104
Current chains
- Chain A
- 23S ribsomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain I
- 50S ribosomal protein L11
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