J3_3J5L_018

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J5L_018 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0652

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3J5L|1|A|G|1424
3J5L|1|A|G|1425
3J5L|1|A|G|1426
3J5L|1|A|A|1427
3J5L|1|A|C|1428
3J5L|1|A|G|1429
*
3J5L|1|A|C|1564
3J5L|1|A|C|1565
*
3J5L|1|A|G|1568
3J5L|1|A|A|1569
3J5L|1|A|A|1570
3J5L|1|A|A|1571
3J5L|1|A|A|1572
3J5L|1|A|G|1573
3J5L|1|A|C|1574

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain C

50S ribosomal protein L2