Motif J3_34864.2 Version J3_34864.2 of this group appears in releases 3.91 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-13 | 4-12 | 6-7 | 8-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4WF9_017 | 4WF9 | 0.1054 | 0 | X | LSU rRNA | G | 1468 | G | 1469 | G | 1470 | A | 1471 | C | 1472 | G | 1473 | * | C | 1611 | C | 1612 | * | G | 1615 | A | 1616 | A | 1617 | A | 1618 | A | 1619 | G | 1620 | C | 1621 | cWW | tSH | tSH | tHH | cWW | cWW |
| 2 | J3_9DFE_013 | 9DFE | 0.0861 | 0 | 1A | LSU rRNA | G | 1424 | G | 1425 | G | 1426 | A | 1427 | C | 1428 | G | 1429 | * | C | 1564 | C | 1565 | * | G | 1568 | A | 1569 | A | 1570 | A | 1571 | A | 1572 | G | 1573 | C | 1574 | cWW | tSH | tSH | tHH | cWW | cWW |
| 3 | J3_5J7L_069 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | G | 1424 | G | 1425 | G | 1426 | A | 1427 | C | 1428 | G | 1429 | * | C | 1564 | C | 1565 | * | G | 1568 | A | 1569 | A | 1570 | A | 1571 | A | 1572 | G | 1573 | C | 1574 | cWW | tSH | tSH | tHH | cWW | cWW |
| 4 | J3_7A0S_019 | 7A0S | 0.1079 | 0 | X | LSU rRNA | G | 1438 | G | 1439 | G | 1440 | A | 1441 | C | 1442 | G | 1443 | * | C | 1580 | C | 1581 | * | G | 1584 | A | 1585 | A | 1586 | A | 1587 | A | 1588 | G | 1589 | C | 1590 | cWW | ntSH | tSH | ntHH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGACG*CC*GAAAAGC | 4 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAC**AAAAG | 4 |
- Annotations
-
- (4)
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.08 | Max 0.12
Coloring options: