J3_3J6B_006
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAAG*UGUAGAC*GUA
- Length
- 14 nucleotides
- Bulged bases
- 3J6B|1|A|U|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6B_006 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.227
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3J6B|1|A|U|1337
3J6B|1|A|A|1338
3J6B|1|A|A|1339
3J6B|1|A|G|1340
*
3J6B|1|A|U|1557
3J6B|1|A|G|1558
3J6B|1|A|U|1559
3J6B|1|A|A|1560
3J6B|1|A|G|1561
3J6B|1|A|A|1562
3J6B|1|A|C|1563
*
3J6B|1|A|G|1572
3J6B|1|A|U|1573
3J6B|1|A|A|1574
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 3
- 54S ribosomal protein L27, mitochondrial
- Chain Y
- 54S ribosomal protein L34, mitochondrial
- Chain d
- Mitochondrial homologous recombination protein 1
Coloring options: