J3_3J6X_014
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 3J6X|1|2S|G|120, 3J6X|1|2S|A|121, 3J6X|1|2S|G|156
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6X_014 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.1529
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
3J6X|1|2S|C|113
3J6X|1|2S|A|114
3J6X|1|2S|A|115
3J6X|1|2S|A|116
3J6X|1|2S|U|117
3J6X|1|2S|U|118
3J6X|1|2S|U|119
3J6X|1|2S|G|120
3J6X|1|2S|A|121
3J6X|1|2S|A|122
3J6X|1|2S|A|123
*
3J6X|1|2S|U|149
3J6X|1|2S|A|150
3J6X|1|2S|A|151
3J6X|1|2S|U|152
3J6X|1|2S|U|153
3J6X|1|2S|U|154
3J6X|1|2S|G|155
3J6X|1|2S|G|156
3J6X|1|2S|A|157
3J6X|1|2S|G|158
*
3J6X|1|2S|C|263
3J6X|1|2S|G|264
3J6X|1|2S|A|265
3J6X|1|2S|A|266
3J6X|1|2S|G|267
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 55
- 60S ribosomal protein L15
- Chain 75
- 60S ribosomal protein L35
- Chain 76
- 60S ribosomal protein L36
- Chain L8
- 60S ribosomal protein L8
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