J3_3J6X_015
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6X_015 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.2012
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
3J6X|1|2S|A|369
3J6X|1|2S|U|370
3J6X|1|2S|G|371
3J6X|1|2S|A|372
3J6X|1|2S|A|373
3J6X|1|2S|A|374
3J6X|1|2S|A|375
3J6X|1|2S|G|376
*
3J6X|1|2S|C|403
3J6X|1|2S|G|404
*
3J6X|1|8S|C|19
3J6X|1|8S|U|20
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 57
- 60S ribosomal protein L17
- Chain 66
- 60S ribosomal protein L26
- Chain 79
- 60S ribosomal protein L39
- Chain L4
- 60S ribosomal protein L4
Coloring options: