J3_3J6X_025
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6X_025 not in the Motif Atlas
- Homologous match to J3_5TBW_012
- Geometric discrepancy: 0.1945
- The information below is about J3_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
3J6X|1|2S|A|2432
3J6X|1|2S|U|2433
3J6X|1|2S|U|2434
3J6X|1|2S|G|2435
*
3J6X|1|2S|C|2512
3J6X|1|2S|U|2513
3J6X|1|2S|U|2514
3J6X|1|2S|A|2515
3J6X|1|2S|U|2516
3J6X|1|2S|U|2517
*
3J6X|1|2S|A|2590
3J6X|1|2S|A|2591
3J6X|1|2S|G|2592
3J6X|1|2S|A|2593
3J6X|1|2S|C|2594
3J6X|1|2S|A|2595
3J6X|1|2S|U|2596
3J6X|1|2S|U|2597
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 55
- 60S ribosomal protein L15
- Chain 76
- 60S ribosomal protein L36
- Chain L2
- 60S ribosomal protein L2
- Chain L8
- 60S ribosomal protein L8
Coloring options: