J3_3J6X_027
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 3J6X|1|2S|A|2703
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6X_027 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.194
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J6X|1|2S|C|2664
3J6X|1|2S|U|2665
3J6X|1|2S|C|2666
*
3J6X|1|2S|G|2690
3J6X|1|2S|A|2691
3J6X|1|2S|A|2692
*
3J6X|1|2S|U|2701
3J6X|1|2S|A|2702
3J6X|1|2S|A|2703
3J6X|1|2S|A|2704
3J6X|1|2S|A|2705
3J6X|1|2S|G|2706
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 51
- 60S ribosomal protein L11
- Chain 5S
- 5S ribosomal RNA; 5S rRNA
- Chain 61
- 60S ribosomal protein L21
- Chain L5
- 60S ribosomal protein L5
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